PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24953.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 207aa    MW: 23520.6 Da    PI: 9.0183
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24953.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.86.6e-37101002101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d++ ++++sw+e+g++fvv+++ efa+ +Lp+yFkh+nf+SFvRQLn+YgF+k+ +++         weF +++F++g++ell++i+
    KZV24953.1  10 FITKTYSLVDDPSSNDVVSWNEDGTTFVVWKTAEFARVLLPNYFKHNNFSSFVRQLNTYGFRKIAQNK---------WEFCNDNFRRGQQELLTQIH 97 
                   9***************************************************************9988.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    KZV24953.1  98 RRK 100
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-54699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.06E-34799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.8E-38899IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAQRCVPSPF ITKTYSLVDD PSSNDVVSWN EDGTTFVVWK TAEFARVLLP NYFKHNNFSS  60
FVRQLNTYGF RKIAQNKWEF CNDNFRRGQQ ELLTQIHRRK IAPPQPPPGN PASPGDELGS  120
STTGSLDTQA SPRITDLSDE NEKLRKDNQA LNLELVQTKR QCNDLICFLS KNMQVDPDQI  180
NRVLSRSDSA PMPSVKCVRL FGVILKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D6e-2369926129Heat shock factor protein 1
5d5v_B6e-2369926129Heat shock factor protein 1
5d5u_B6e-2369926129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099137.16e-87PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-81HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLQ9SXK91e-82Q9SXK9_TOBAC; Heat shock factor
STRINGVIT_07s0031g00670.t019e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.15e-66heat shock factor 4